Palette issues editing portraits and sprites

I tried going from scratch on a clean rom and didn't run into the same issue, so I'm going to write it off as user error - maybe I screwed up the palette itself.

However now a different issue has cropped up doing the same operation (switching cyan and leo) with the sprite default overland palette reverting to the originals (cyan, now leo gfx, going to palette 4 and leo, now cyan gfx, going to palette 0) when viewing the rom with FF3usME