FF3usME v.6.5 Error

Hey all, well I have FF3usME version 6.5. However, whenever I click Single Monster Editor, and then Click Battle Scripts, I get an error saying:
There is a bug in the Mag Roader Script, FF3usME cannot continue without repairing it. Will you let FF3usME fix this bug?
I click yes and all's perfect, so I proceeded editing my monster's stats and so forth and finally when I wished to test it out, I clicked save and closed the program. Later on, I reopened it and whenever I went to Battle Scripts, I was faced with the previous error again. I was a little unsure about the program then but just clicked "Yes" again and it "fixed" the bug. However, here's what really ticked me off. All my previously edited monster scripts were back to default and not like I had edited them earlier!
So once I cooled down, I just tested it out again, just really quick to see if it would always do this again and it does! I edited my Guard to use the Spell Fire on his script page, saved, closed program, and re-launched only to be faced with the bug once more, and, as I expected, my guards stats were set to default.
I'm really not sure why it's doing this, I'm running Windows 7 but I have the Compatibility Mode set to Windows Service Pack 2 (I've tried all three actually to no avail) and have ran it as Administrator.
I even tested the program on my brother's Windows XP Computer and it did the exact same thing! I'm really hating this right now, but any insight as to what I need to do is GREATLY appreciated. I'm also using a FF3 ROM (1.0) downloaded from Zeemis via his Youtube Channel.

Thanks in advance.
xJCSx