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so I don't know what exactly "conflicts" or if there are resources available for relocation of one or the other to avoid conflicts.

The conflict arise from the patch and FF6LE Rogue CE using the same free SRAM (partially I think). I don't know how many free SRAM bytes the patch needs, but you would need to modify either the patch or FF6LE to use another range of free SRAM. I remember the block I've used had about $20 free bytes ($1E1D-$1E3F but not in totality).