FF6LE Rogue CE / Zone Doctor CE

I have something to report, I know you aren't the original author of this program but I will give it a try just in case.

I'm using a Super UFO PRO to play ROMs on my real SNES, it's very strict (in comparison to the Super EverDrive which run pretty much everything) and when I save any FF3 ROMs with any versions of FF3LE (original, Rogue and CE), the Super UFO refuse to load the ROM, it says: FILE TYPE ERROR. FF3LE always did that to me but not ZoneDoctor. I have the impression that FF3LE break something which prevent the ROM to be loaded by some devices.

One thing is sure, FF3LE does something that it's not supposed to, I used many FF3 editors/programs and none of them causes that but ALL FF3LE ports does (except ZoneDoctor but this one seems to have been remade from scratch instead of being based on FF3LE, could be wrong tho). Everything is fine if you run on emulators (never tried BSNES tho) but that's to be expected.

If you're interested to investigate, I can send you a ROM saved with FF3LE and the same rom saved with ZoneDoctor if you want to compare both.