Pony Fantasy VI Remake

In-game palettes include battle and overworld (and some others). Battle palettes are set from a table, that unless your doing something crazy, whould be in one set place and editors can change it.

Overworld (such as town/overworld maps) which are set with event commands, generally at recruitment and won't be saved or updated by any conventional editor.

Then there are the palette settings for shops, character select screens, and the save menu, which are set in OAM data (simply another table full of blocks of data for stuffs). What I don't recall is if usME changes those or not. Or for that matter the game might update them on the fly from character data with the event palette setting. So, if they don't show up in a shop correctly, you'd have to set the palettes proper in that data as well.

Someone correct me if I'm lost on that statement. If I am correct, its easy as ... its easy. Just need a map, as I said. Load a save before recruiting those characters that you gave a new palette, play through recruiting them, then check the save screen and a shop screen see if they have the correctly updated palette.

As for disassemblies, they really are not THAT complicated, however, until you've used them for awhile you really shouldn't try looking at the whole thing at once. Have to force yourself to only look at one block of code at a time and see whats going on. If you don't understand what a line is doing, ask about that line.  

Some explinations on all those three letter things in there:
Op codes
... I can't find my bookmark on explinations of those, but that one will tell you more than LDA, BRA, JSR, ext.

Yeah yeah, I'm a slow typer and my phone wants to argue, anyway, as Nattak said, I think he said it, you just have to learn. Don't forget everybody was a noob once, most of us still are. Hell you dig deep enough in forums and you'll find some questions ask by senior members that even you could answer right now.

So yeah, one step at a time, don't get ahead of yourself.