Pony Fantasy VI Remake

I'd recommend patching them one by one on a clean ROM until you find out which one is doing it or conflicting with another. So patch, try to run, patch, try to run, until the freeze happens. Then you can go about repairing yours by doing a ips patch report on the culprit patch, and reverting that patch back to original data. This is assuming there is no anti-patch that came with it.

EDIT: You did the patch conflict program though so maybe it's not this. I still think it's gonna be one needed or didn't need a header and it was applied wrong.