Official FF6: Beyond Chaos thread (randomizer)

Ok, I have no idea what I'm doing wrong, but I cannot get this randomizer to work. I tried both the Python and the .exe version of the randomizer, left the seed blank at all times, I tried leaving the flag blanks (which should activate them all) and typing in each flag, but no matter what, I get one of three outcomes: 1, everything is normal. 2, All the pallates are normal, but Terra has Blitz, no magic. Pummel is the usual left right left input. 3, all the palletes are normal, but Terra has Rage. And only a guard. Locke sometimes has a relic called Dragon Slave for his weapon on outcomes 2 and 3. My rom is unheadered, and should be version 1.0. I downloaded the BeyondChaosMaster zip, to boot, and am using that. Any ideas?